Ok, now we're getting more complicated:
Courtney, if you want these lead scores to be seen in SFDC, you must do this:
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create new fields in SFDC
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sync to Marketo (automatic)
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make sure they are properly set as lead score fields.
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https://community.marketo.com/MarketoDiscussionDetail?id=90650000000PTwsAAG
You will have to modify MSI to handle differing fields. Unfortunately, I do not see how you would offer different groups different lead scores - they'd all see the same fields. You could restrict the Profile View on SFDC to only show certain scoring fields, but MSI will still use the universal settings.