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This is the site I was using: Campaign URL Builder — Google Analytics Demos & Tools
Yes, this is how the Google Analytics UTM builder is now creating them, so it was easy to miss it that change when uploading links.
I was just told that if your URL contains a #, it will strip out the parameters when it sends the info to Google Analytics.example.com/#utm_source=Marketo&utm_medium=email&utm_campaign=SampleInstead replace the # with a ?. I am going to test this out, but hopefully it was the same issue for you.