Solved! Go to Solution.
I was using tokens for the URLs in the emails. These clicks weren't tracked. The solution was to remove the "http://" from the tokens and put the in the emails to make sure they are tracked.
<a href="{{my.landingpageurl}}">anchor</a>
{{my.landingpageurl}} = http://connect.quintiq.com/landingpageurl.html
<a href="http://{{my.landingpageurl}}">anchor</a>
{{my.landingpageurl}} = connect.quintiq.com/landingpageurl.html