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We actually just encountered this issue ourselves! My understanding is that our IT team basically created anyone who is a portal user as a separate "user" (with Portal in front of their name). This makes it easy for us in Marketo, if we are doing a fairly manual assignment of leads, to make sure we are assigning to the not-a-portal-salesperson. We also use auto assignment rules in SFDC which they have configured so that portal owners do not own leads, I believe.