Hi Cecile Maindron,
Have you tried to add a Wait step? I use this on multiple flows, which allows Marketo to update all the necessary fields before the trigger is fired. It helps solve a lot of these issues.
Let me know if this helps!
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Can you show us how your campaigns are set up? It sounds like you should be able to do a trigger and then a filter. For example, fills out form and then add a filter for clicked on email. You will just want to make sure that you don't include two triggers because triggers are treated as "ors" not "ands".
Apparently, you are facing order of execution / race condition issues.
Have you read that post: How to Control Order of Operations in Marketo
As suggested by Sara, screenshots of your smart campaign filters may enable us to help you more.